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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn167511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 68aa MW: 7461.64 Da PI: 8.0478 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3.1e-08 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg+WT+ Ed+ l++++k +G g W+ ++ Achn167511 14 RGAWTAVEDKVLIEYIKVHGEGKWRNLPKL 43 89**********************988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-11 | 5 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.1E-8 | 8 | 48 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.992 | 9 | 49 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 4.8E-6 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.20E-5 | 16 | 49 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MGRSRCCPKE GLNRGAWTAV EDKVLIEYIK VHGEGKWRNL PKLAVCYRTL QVEGDGGQLM 60 EVATDAI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107990.1 | 2e-22 | Anthocyanin regulatory C1 protein | ||||
Swissprot | Q9FLR1 | 4e-14 | MYB29_ARATH; Transcription factor MYB29 | ||||
Swissprot | Q9SZP1 | 4e-14 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | W9S6E4 | 2e-22 | W9S6E4_9R | ||||
STRING | VIT_09s0002g01400.t01 | 3e-21 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15484 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 9e-17 | myb domain protein 41 |